Explore
FAQ
About
Ben Braverman
Affiliation:
Arcadia Science
ORCID:
https://orcid.org/0009-0005-0334-7004
Pubs
Collaborators
Megan L. Hochstrasser
0
Taylor Reiter
0
Prachee Avasthi
0
Feridun Mert Celebi
0
Audrey Bell
0
Ryan York
0
Adair L. Borges
0
Elizabeth A. McDaniel
0
David G. Mets
0
Brae M. Bigge
0
Emily C.P. Weiss
0
Austin H. Patton
0
Dennis A. Sun
0
Rachel J. Dutton
0
Keith Cheveralls
0
Tara Essock-Burns
0
Atanas Radkov
0
Erin McGeever
0
Cameron Dale MacQuarrie
0
Harper Wood
0
Ryan Lane
0
Galo Garcia III
0
David Q. Matus
0
Januka Athukoralage
0
Sunanda Sharma
0
0
Distinct spatiotemporal movement properties reveal sub-modalities in crawling cell types
0
Discovering shared protein structure signatures connected to polyphosphate accumulation in diverse bacteria
0
Paired residue prediction dependencies in ESM2
0
Designing genome-wide MERFISH probes for understudied species
0
Putative horizontal gene transfer events point to candidate genes involved in cross-species neuromodulation
0
Raman spectroscopy enables rapid and inexpensive exploration of biology
0
Compound 48/80 is toxic in HMC1.2 and RBL-2H3 cells
0
The experiment begins: Arcadia publishing 1.0
0
Paired long- and short-read metagenomics of cheese rind microbial communities at multiple time points
0
How can we biochemically validate protein function predictions with the Ras GTPase family?
0
Phenotypic differences between interfertile _Chlamydomonas_ species
0
Early update on Arcadia publishing 2.0: Scientists are in charge, speed is an issue
0
Identification of capsid-like proteins in venomous and parasitic animals
0
Performing mass spectrometry-based proteomics in organisms with minimal reference protein databases
0
ProteinCartography: Comparing proteins with structure-based maps for interactive exploration
0
NovelTree: Highly parallelized phylogenomic inference
0
Speeding up the quality control of raw sequencing data using seqqc, a Nextflow-based solution
0
Harnessing genotype-phenotype nonlinearity to accelerate biological prediction
0
Using protein language models to predict coding and non-coding transcripts with plm-utils
0
Predicted genes from the _Amblyomma americanum_ draft genome assembly
0
Streamlining genome assembly and QC with the reads2genome workflow
0
How can we biochemically validate protein function predictions with the deoxycytidine kinase family?
0
A capsid-based search recovers viral sequences from human brain sequencing data
0
Gotta catch ‘em all: Agar microchambers for high-throughput single-cell live imaging
0
Applying information theory to genetics can better explain biological phenomena
0
A new R package, sourmashconsumr, for analyzing and visualizing the outputs of sourmash
0
Rescuing _Chlamydomonas_ motility in mutants modeling spermatogenic failure
0
The phenotype-o-mat: A flexible tool for collecting visual phenotypes
0
Predicting bioactive peptides from transcriptome assemblies with the peptigate workflow
0
Icebox is a science-sharing strategy designed to encourage risk-taking
0
Label-free neuroimaging in mice captures sensory activity in response to tactile stimuli and acute pain
0
Raman spectra reflect complex phylogenetic relationships
0
Chlorarachniophytes form light- and Arp2/3 complex-dependent extensions that are involved in motility and predation
0
DIY Raman spectroscopy for biological research
0
Creating reproducible workflows for complex computational pipelines
0
Exploring the actin family: A case study for ProteinCartography
0
The experiment continues: Arcadia publishing 2.0
0
A structurally divergent actin conserved in fungi has no association with specific traits
0
Clustering the NCBI nr database to reduce database size and enable faster BLAST searches
0
Creating a 7,000-strain _E. coli_ genotype dataset with antimicrobial resistance phenotypes
0
Identifying candidate accessory domains by mining putative venom protein fusions
0
Comparative phylogenomic analysis of chelicerates points to gene families associated with long-term suppression of host detection
0
Robust long-read saliva transcriptome and proteome from the lone star tick, _Amblyomma americanum_
0
PreHGT: A scalable workflow that screens for horizontal gene transfer within and between kingdoms
0
A data-driven approach to match organisms and research problems
0
How can we measure and communicate the impact of science?
0
Comparing gene expression across species based on protein structure
0
Isolation of a phage with an arabinosylated genome from a cheese microbial community
0
An experimental and computational workflow to characterize nematode motility behavior
0
Automated classification of time-course imaging data applied to nematode embryogenesis
0
Challenges of isolating bacteriophage mRNA for chemical analysis
0
HiPR-FISH spatial mapping of cheese rind microbial communities
0
_De novo_ assembly of a long-read _Amblyomma americanum_ tick genome
0
A strategy to validate protein function predictions _in vitro_
0
Combinatorial indexing and screening of clonal DNA fragments
0
Structure-based protein clustering sometimes, but not always, provides insight into protein function
0
How can we improve upon and expand the scope of our phylogenomic inferences?
0
Microchamber slide design for cell confinement during imaging
0
A workflow to isolate phage DNA and identify nucleosides by HPLC and mass spectrometry
0
A high-throughput imaging approach to track and quantify single-cell swimming
0
Closing the divide between analysis and publication: The notebook pub
0
Streamlining microscopy datasets by enriching for in-focus frames
0
Repeat expansions associated with human disease are present in diverse organisms
0
Inducing protoplast formation in _Phaeodactylum tricornutum_ by silica deprivation, enzymatic treatment, or cytoskeletal inhibition
0
Defining actin: Combining sequence, structure, and functional analysis to propose useful boundaries
0
Identifying circular DNA using short-read mapping
0
How can we identify the common molecular signatures underlying polyphosphate accumulation?
0
Quickly preprocessing and profiling microbial community sequencing data with a Nextflow workflow for metagenomics
0
An interactive visualization tool for _Amblyomma americanum_ differential expression data
0
The known protein universe is phylogenetically biased
0
Leveraging evolution to identify novel organismal models of human biology
0
Predicting antimicrobial resistance phenotypes across 7,000 _E. coli_ genomes
0
Comparison of spontaneous Raman spectrometers
Get notified about new pubs!
Subscribe to Digest
Navigation
Arcadia Science
Arcadia Terms of Use
Arcadia Privacy Policy
RSS
Contact
info@arcadiascience.com
510-788-1110
© 2025 ARCADIA SCIENCE. ISSN 2998-4084