Published on May 01, 2025 by Arcadia Science Cross-trait learning with a canonical transformer tops custom attention in genotype–phenotype mapping
We added standard transformer components, omitted by Rijal et al. (2025) in their attention-based genotype–phenotype mapping. We found this addition substantially boosts predictive accuracy on their yeast dataset.
Contributors (A-Z)
Version 1 · May 02, 2025
Cross-trait learning with a canonical transformer tops custom attention in genotype–phenotype mapping
The full pub is available here.
The source code to generate it is available in this GitHub repo (DOI: 10.5281/zenodo.15320438).
In the future, we hope to host notebook pubs directly on PubPub. Until that’s possible, we’ll create stubs like this with key metadata like the DOI, author roles, citation information, and an external link to the pub itself.
References
Pub details
Arcadia
York R, Kiefl E, Bigge BM, McGeever E. (2025). Cross-trait learning with a canonical transformer tops custom attention in genotype–phenotype mapping. https://doi.org/10.57844/arcadia-bmb9-fzxd
apa
York, R., Kiefl, E., Bigge, B. M., & McGeever, E. (2025). Cross-trait learning with a canonical transformer tops custom attention in genotype–phenotype mapping. https://doi.org/10.57844/arcadia-bmb9-fzxd
harvard
York, R. et al. (2025) 'Cross-trait learning with a canonical transformer tops custom attention in genotype–phenotype mapping'. doi:10.57844/arcadia-bmb9-fzxd.
vancouver
1.
York R, Kiefl E, Bigge BM, McGeever E. Cross-trait learning with a canonical transformer tops custom attention in genotype–phenotype mapping. 2025 May 1; Available from: https://research.arcadiascience.com/pub/observation-geno-pheno-attention/release/1
bibtex
@article{York2025Cross,
author = {York, Ryan and Kiefl, Evan and Bigge, Brae M. and McGeever, Erin},
doi = {10.57844/arcadia-bmb9-fzxd},
issn = {2998-4084},
year = {2025},
month = {may 1},
publisher = {Arcadia Science},
title = {Cross-trait learning with a canonical transformer tops custom attention in genotype--phenotype mapping},
url = {https://research.arcadiascience.com/pub/observation-geno-pheno-attention/release/1},
}
Brae M. Bigge
Supervision
Evan Kiefl
Conceptualization, Formal Analysis, Investigation, Software, Validation, Writing
Erin McGeever
Conceptualization, Data Curation, Investigation, Software, Validation
George Sandler
Editing
