Erin McGeever

Software Engineer

NovelTree: Highly parallelized phylogenomic inference

Feridun Mert Celebi, Seemay Chou, Erin McGeever, Austin H. Patton, and Ryan York

Published: Sep 29, 2023

We want to find and use evolutionary innovations to solve present-day problems. We developed NovelTree, an efficient phylogenomic workflow that will empower us to decode the evolutionary traces of these innovations across the tree of life.

Connections

Supplements (3): NovelTree workflow v1.0.1-alpha - GitHub • Code for TSAR analysis v1.0.0 - GitHub • Data and workflow outputs from example TSAR analysis - Zenodo

ProteinCartography: Comparing proteins with structure-based maps for interactive exploration

Prachee Avasthi, Brae M. Bigge, Feridun Mert Celebi, Jase Gehring, Erin McGeever, Atanas Radkov, and Dennis A. Sun

Published: Sep 29, 2023

The ProteinCartography pipeline identifies proteins related to a query protein using sequence- and structure-based searches, compares all protein structures, and creates a navigable map that can be used to look at protein relationships and make hypotheses about function.

Connections

Supplements (2): ProteinCartography v0.4.0-alpha - GitHub • Data - Zenodo