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About
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Isabel Nocedal
Affiliation:
Arcadia Science
ORCID:
https://orcid.org/0000-0002-4706-1113
Pubs
Collaborators
Ryan York
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Evan Kiefl
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Distinct spatiotemporal movement properties reveal sub-modalities in crawling cell types
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Cross-trait learning with a canonical transformer tops custom attention in genotype–phenotype mapping
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The known protein universe is phylogenetically biased
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Raman spectroscopy enables rapid and inexpensive exploration of biology
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Do protein language models understand evolution? Mixed evidence from ancestral sequences and ESM2
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How can we biochemically validate protein function predictions with the Ras GTPase family?
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Phenotypic differences between interfertile _Chlamydomonas_ species
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Identification of capsid-like proteins in venomous and parasitic animals
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NovelTree: Highly parallelized phylogenomic inference
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Leveraging evolution to identify novel organismal models of human biology
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Harnessing genotype-phenotype nonlinearity to accelerate biological prediction
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A framework for modeling human monogenic diseases by deploying organism selection
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How can we biochemically validate protein function predictions with the deoxycytidine kinase family?
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Gotta catch ‘em all: Agar microchambers for high-throughput single-cell live imaging
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Applying information theory to genetics can better explain biological phenomena
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Modeling human monogenic diseases using the choanoflagellate _Salpingoeca rosetta_
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The phenotype-o-mat: A flexible tool for collecting visual phenotypes
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Raman spectra reflect complex phylogenetic relationships
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Exploring the actin family: A case study for ProteinCartography
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A structurally divergent actin conserved in fungi has no association with specific traits
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Graph neural networks: A unifying predictive model architecture for evolutionary applications
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Phylogenies and biological foundation models
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Predicting antimicrobial resistance phenotypes across 7,000 _E. coli_ genomes
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Comparative phylogenomic analysis of chelicerates points to gene families associated with long-term suppression of host detection
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A data-driven approach to match organisms and research problems
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Comparing gene expression across species based on protein structure
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A strategy to validate protein function predictions _in vitro_
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Modeling human monogenic diseases using the tunicate _Ciona intestinalis_
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Structure-based protein clustering sometimes, but not always, provides insight into protein function
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How can we improve upon and expand the scope of our phylogenomic inferences?
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Epistasis and deep learning in quantitative genetics
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Microchamber slide design for cell confinement during imaging
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Closing the divide between analysis and publication: The notebook pub
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Paired residue prediction dependencies in ESM2
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