Seemay Chou, Kira E. Poskanzer, and Peter S. Thuy-Boun
Published: May 31, 2022
If you’re interested in generating proteomics data but your organism of interest doesn’t have a sequenced genome to use as a reference database, it is straightforward and useful to collect a transcriptome instead.
Feridun Mert Celebi, Elizabeth A. McDaniel, and Taylor Reiter
Published: Mar 07, 2023
A workflow orchestration framework can streamline repeatable tasks and make workflows broadly usable. From several options, we chose Nextflow due to the ease of deploying across platforms, vibrant nf-core community, and ability to manage and monitor workflows with Nextflow Tower.
Seemay Chou, Kira E. Poskanzer, MaryClare Rollins, and Peter S. Thuy-Boun
Published: Mar 30, 2023
We generated a whole-genome assembly for the lone star tick to serve as a reference for downstream efforts where whole-genome maps are required. We created our assembly using pooled DNA from salivary glands of 50 adult female ticks that we sequenced using PacBio HiFi reads.