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KP
Kira E. Poskanzer
SC
TD
BF
WH
KP
+6
Published: May 31, 2022
If you’re interested in generating proteomics data but your organism of interest doesn’t have a sequenced genome to use as a reference database, it is straightforward and useful to collect a transcriptome instead.
SC
BF
WH
KP
MR
+6
Published: May 31, 2022
The way you generate a reference database has a real impact on the completeness and results of proteomics experiments.
SC
TD
BF
KP
TR
+2
Published: Mar 30, 2023
We generated a whole-genome assembly for the lone star tick to serve as a reference for downstream efforts where whole-genome maps are required. We created our assembly using pooled DNA from salivary glands of 50 adult female ticks that we sequenced using PacBio HiFi reads.
RD
KP
TR
Published: Aug 25, 2023
We implemented a lightweight method to identify viruses in 342 human brain bulk and single-cell sequencing data sets, and identified two glioblastoma cells from a single patient that contained deltapolyomavirus sequences.
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Supplements (1): Code v1.0 - GitHub
