Kira E. Poskanzer

Performing mass spectrometry-based proteomics in organisms with minimal reference protein databases

Seemay Chou, Kira E. Poskanzer, and Peter S. Thuy-Boun

Published: May 31, 2022

If you’re interested in generating proteomics data but your organism of interest doesn’t have a sequenced genome to use as a reference database, it is straightforward and useful to collect a transcriptome instead.

Connections

Supplements (1): Protocol - A parallel transcriptomics and proteomics workflow for organisms with minimal reference protein databases - protocols.io

Robust long-read saliva transcriptome and proteome from the lone star tick, Amblyomma americanum

Seemay Chou, Kira E. Poskanzer, and Peter S. Thuy-Boun

Published: May 31, 2022

The way you generate a reference database has a real impact on the completeness and results of proteomics experiments.

Connections

Supplements (3): Transcriptomics Data - SRA • Proteomics Data - PRIDE • Protocol - A parallel transcriptomics and proteomics workflow for organisms with minimal reference protein databases - protocols.io